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Screens for Nucleic Acids
For crystallization of nucleic acids & n.a.-protein complexes.
www.mitegen.com
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Provides articles and FAQ explaining cartoon depictions, atlas of tertiary arrangements of polypeptides within predicted crystal. Includes server for upload of PDB code, and software downloads from University of Leeds, UK.
www.tops.leeds.ac.uk
Structural Classification of Proteins
A key for different proteins based on structural features, with keyword search and PDB data, and an entry viewer for download.
scop.mrc-lmb.cam.ac.uk
An attempt to classify all proteins from SWISSPROT and TrEMBL into groups of related proteins.
protomap.cornell.edu
Atlas of Protein Side-Chain Interactions
Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.
www.biochem.ucl.ac.uk
PDB provides a text based format for archiving experimentally-determined, three dimensional structures, at the Brookhaven National Laboratory, with list of mirror sites worldwide.
www.rcsb.org
Principles of Protein Structure
Archive of online course, with discussion lists, and summary of lecture notes from 1996 at Birkbeck, University of London, UK.
www.cryst.bbk.ac.uk
Large scale attempt to determine topology, through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.
www.structuralgenomics.org
Protein alignments organised as a database of over 5000 protein domains organized into structural superfamilies, including references maintained by the Department of Biochemistry, University of Cambridge, UK.
merlin.bioc.cam.ac.uk
Protein Structure Prediction Center
Advances and archive of meetings on critical assessment of 3D determination from sequence using alignment tools. Maintained at Lawrence Livermore National Laboratory, California.
predictioncenter.llnl.gov
Macromolecular Structure Database
Resource for the deposition and validation of newly proposed structures, maintained by research group, within the European Bioinformatics Institute, Hinxton, UK.
www.ebi.ac.uk
Glucocorticoid and Nuclear Receptor Resource
Collection of individual databases on members of the steroid and thyroid hormone and their receptors from Georgetown University, Washington, DC.
nrr.georgetown.edu
Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.
genome.nhgri.nih.gov
Hydrogen Exchange Mass Spectrometry
Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.
www.hxms.com
Metalloprotein Database and Browser
Resources for coordination patterns, and estimating distance between metal and ligand at binding sites. Includes search and visualization interfaces, maintained by the Scripps Research Institute, La Jolla, CA.
metallo.scripps.edu
N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
www.cbs.dtu.dk