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Bioinformatics Software
The G6G Directory of Omics and Intelligent Software
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Directory Sites
This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
www.geneflowinc.com
Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
www-personal.une.edu.au
Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
www-personal.une.edu.au
Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
agbu.une.edu.au
Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
nce.ads.uga.edu
Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
www.tzv.fal.de
Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted.
abri.une.edu.au
Laboratory of Plant Breeding, Wageningen
Offers free downloadable genetics and plant breeding related software.
www.dpw.wau.nl
Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
www-personal.une.edu.au
Quantitative Genetics Resources
List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.
nitro.biosci.arizona.edu
Finnish Forest Genetics and Tree Breeding
Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
www.metla.fi
Animal Breeding & Genetics, Wageningen
Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
www.zod.wau.nl
The CompuPed 4.0 Pedigree Program
Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
www.mbfs.com
Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.
uncronopio.org
Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
www.bigbenchsoftware.com